Can anyone understand my error log

Community Cloud
1

I am trying to deploy an app and can’t figure out the log error. Can someone please help?

 Installing build dependencies: started
  Installing build dependencies: still running...
  Installing build dependencies: still running...
  Installing build dependencies: finished with status 'done'
  Getting requirements to build wheel: started
  Getting requirements to build wheel: finished with status 'done'
  Preparing metadata (pyproject.toml): started
  Preparing metadata (pyproject.toml): finished with status 'error'
  error: subprocess-exited-with-error
  
  × Preparing metadata (pyproject.toml) did not run successfully.
  │ exit code: 1
  ╰─> [167 lines of output]
      <string>:460: UserWarning: Unrecognized setuptools command ('dist_info --output-dir /tmp/pip-modern-metadata-6aw9froc --keep-egg-info'), proceeding with generating Cython sources and expanding templates
      Running from SciPy source directory.
      lapack_opt_info:
      lapack_mkl_info:
      customize UnixCCompiler
        libraries mkl_rt not found in ['/home/appuser/venv/lib', '/usr/local/lib', '/usr/lib64', '/usr/lib', '/usr/lib/x86_64-linux-gnu']
        NOT AVAILABLE
      
      openblas_lapack_info:
      customize UnixCCompiler
      customize UnixCCompiler
        libraries openblas not found in ['/home/appuser/venv/lib', '/usr/local/lib', '/usr/lib64', '/usr/lib', '/usr/lib/x86_64-linux-gnu']
        NOT AVAILABLE
      
      openblas_clapack_info:
      customize UnixCCompiler
      customize UnixCCompiler
        libraries openblas,lapack not found in ['/home/appuser/venv/lib', '/usr/local/lib', '/usr/lib64', '/usr/lib', '/usr/lib/x86_64-linux-gnu']
        NOT AVAILABLE
      
      flame_info:
      customize UnixCCompiler
        libraries flame not found in ['/home/appuser/venv/lib', '/usr/local/lib', '/usr/lib64', '/usr/lib', '/usr/lib/x86_64-linux-gnu']
        NOT AVAILABLE
      
      atlas_3_10_threads_info:
      Setting PTATLAS=ATLAS
      customize UnixCCompiler
        libraries lapack_atlas not found in /home/appuser/venv/lib
      customize UnixCCompiler
        libraries tatlas,tatlas not found in /home/appuser/venv/lib
      customize UnixCCompiler
        libraries lapack_atlas not found in /usr/local/lib
      customize UnixCCompiler
        libraries tatlas,tatlas not found in /usr/local/lib
      customize UnixCCompiler
        libraries lapack_atlas not found in /usr/lib64
      customize UnixCCompiler
        libraries tatlas,tatlas not found in /usr/lib64
      customize UnixCCompiler
        libraries lapack_atlas not found in /usr/lib
      customize UnixCCompiler
        libraries tatlas,tatlas not found in /usr/lib
      customize UnixCCompiler
        libraries lapack_atlas not found in /usr/lib/x86_64-linux-gnu
      customize UnixCCompiler
        libraries tatlas,tatlas not found in /usr/lib/x86_64-linux-gnu
      <class 'numpy.distutils.system_info.atlas_3_10_threads_info'>
        NOT AVAILABLE
      
      atlas_3_10_info:
      customize UnixCCompiler
        libraries lapack_atlas not found in /home/appuser/venv/lib
      customize UnixCCompiler
        libraries satlas,satlas not found in /home/appuser/venv/lib
      customize UnixCCompiler
        libraries lapack_atlas not found in /usr/local/lib
      customize UnixCCompiler
        libraries satlas,satlas not found in /usr/local/lib
      customize UnixCCompiler
        libraries lapack_atlas not found in /usr/lib64
      customize UnixCCompiler
        libraries satlas,satlas not found in /usr/lib64
      customize UnixCCompiler
        libraries lapack_atlas not found in /usr/lib
      customize UnixCCompiler
        libraries satlas,satlas not found in /usr/lib
      customize UnixCCompiler
        libraries lapack_atlas not found in /usr/lib/x86_64-linux-gnu
      customize UnixCCompiler
        libraries satlas,satlas not found in /usr/lib/x86_64-linux-gnu
      <class 'numpy.distutils.system_info.atlas_3_10_info'>
        NOT AVAILABLE
      
      atlas_threads_info:
      Setting PTATLAS=ATLAS
      customize UnixCCompiler
        libraries lapack_atlas not found in /home/appuser/venv/lib
      customize UnixCCompiler
        libraries ptf77blas,ptcblas,atlas not found in /home/appuser/venv/lib
      customize UnixCCompiler
        libraries lapack_atlas not found in /usr/local/lib
      customize UnixCCompiler
        libraries ptf77blas,ptcblas,atlas not found in /usr/local/lib
      customize UnixCCompiler
        libraries lapack_atlas not found in /usr/lib64
      customize UnixCCompiler
        libraries ptf77blas,ptcblas,atlas not found in /usr/lib64
      customize UnixCCompiler
        libraries lapack_atlas not found in /usr/lib
      customize UnixCCompiler
        libraries ptf77blas,ptcblas,atlas not found in /usr/lib
      customize UnixCCompiler
        libraries lapack_atlas not found in /usr/lib/x86_64-linux-gnu
      customize UnixCCompiler
        libraries ptf77blas,ptcblas,atlas not found in /usr/lib/x86_64-linux-gnu
      <class 'numpy.distutils.system_info.atlas_threads_info'>
        NOT AVAILABLE
      
      atlas_info:
      customize UnixCCompiler
        libraries lapack_atlas not found in /home/appuser/venv/lib
      customize UnixCCompiler
        libraries f77blas,cblas,atlas not found in /home/appuser/venv/lib
      customize UnixCCompiler
        libraries lapack_atlas not found in /usr/local/lib
      customize UnixCCompiler
        libraries f77blas,cblas,atlas not found in /usr/local/lib
      customize UnixCCompiler
        libraries lapack_atlas not found in /usr/lib64
      customize UnixCCompiler
        libraries f77blas,cblas,atlas not found in /usr/lib64
      customize UnixCCompiler
        libraries lapack_atlas not found in /usr/lib
      customize UnixCCompiler
        libraries f77blas,cblas,atlas not found in /usr/lib
      customize UnixCCompiler
        libraries lapack_atlas not found in /usr/lib/x86_64-linux-gnu
      customize UnixCCompiler
        libraries f77blas,cblas,atlas not found in /usr/lib/x86_64-linux-gnu
      <class 'numpy.distutils.system_info.atlas_info'>
        NOT AVAILABLE
      
      accelerate_info:
        NOT AVAILABLE
      
      lapack_info:
      customize UnixCCompiler
        libraries lapack not found in ['/home/appuser/venv/lib', '/usr/local/lib', '/usr/lib64', '/usr/lib', '/usr/lib/x86_64-linux-gnu']
        NOT AVAILABLE
      
      /tmp/pip-build-env-0kdvdewl/overlay/lib/python3.9/site-packages/numpy/distutils/system_info.py:1712: UserWarning:
          Lapack (http://www.netlib.org/lapack/) libraries not found.
          Directories to search for the libraries can be specified in the
          numpy/distutils/site.cfg file (section [lapack]) or by setting
          the LAPACK environment variable.
        if getattr(self, '_calc_info_{}'.format(lapack))():
      lapack_src_info:
        NOT AVAILABLE
      
      /tmp/pip-build-env-0kdvdewl/overlay/lib/python3.9/site-packages/numpy/distutils/system_info.py:1712: UserWarning:
          Lapack (http://www.netlib.org/lapack/) sources not found.
          Directories to search for the sources can be specified in the
          numpy/distutils/site.cfg file (section [lapack_src]) or by setting
          the LAPACK_SRC environment variable.
        if getattr(self, '_calc_info_{}'.format(lapack))():
        NOT AVAILABLE
      
      Traceback (most recent call last):
        File "/home/appuser/venv/lib/python3.9/site-packages/pip/_vendor/pep517/in_process/_in_process.py", line 363, in <module>
          main()
        File "/home/appuser/venv/lib/python3.9/site-packages/pip/_vendor/pep517/in_process/_in_process.py", line 345, in main
          json_out['return_val'] = hook(**hook_input['kwargs'])
        File "/home/appuser/venv/lib/python3.9/site-packages/pip/_vendor/pep517/in_process/_in_process.py", line 164, in prepare_metadata_for_build_wheel
          return hook(metadata_directory, config_settings)
        File "/tmp/pip-build-env-0kdvdewl/overlay/lib/python3.9/site-packages/setuptools/build_meta.py", line 377, in prepare_metadata_for_build_wheel
          self.run_setup()
        File "/tmp/pip-build-env-0kdvdewl/overlay/lib/python3.9/site-packages/setuptools/build_meta.py", line 482, in run_setup
          super(_BuildMetaLegacyBackend,
        File "/tmp/pip-build-env-0kdvdewl/overlay/lib/python3.9/site-packages/setuptools/build_meta.py", line 335, in run_setup
          exec(code, locals())
        File "<string>", line 583, in <module>
        File "<string>", line 579, in setup_package
        File "/tmp/pip-build-env-0kdvdewl/overlay/lib/python3.9/site-packages/numpy/distutils/core.py", line 137, in setup
          config = configuration()
        File "<string>", line 477, in configuration
      numpy.distutils.system_info.NotFoundError: No lapack/blas resources found.
      [end of output]
  
  note: This error originates from a subprocess, and is likely not a problem with pip.
error: metadata-generation-failed

× Encountered error while generating package metadata.
╰─> See above for output.
2

Hi @jimchoo91,

Thanks for posting!

Can you share your requirements file?

Caroline :balloon:

3

All fixed now thank you!

4

Can you share what the solution was?

5

Sure - for some reason it was not playing nice with one of my requirements: scipy. So I removed SciPy from the requirements and it worked fine.

1 Like
6

An alternative solution is likely to create a packages.txt file and add the following entries to it:

libblas-dev 
liblapack-dev

Best,
Randy

1 Like
7

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